The diploid genome of the only sclerotia-forming wild-type species in the genus Pleurotus -Pleurotus tuber-regium - provides insights into the mechanism of its biomass conversion from lignocellulose substrates.
Identifieur interne : 000355 ( Main/Exploration ); précédent : 000354; suivant : 000356The diploid genome of the only sclerotia-forming wild-type species in the genus Pleurotus -Pleurotus tuber-regium - provides insights into the mechanism of its biomass conversion from lignocellulose substrates.
Auteurs : Ka-Lung Lam [Hong Kong] ; Kaiwei Si [République populaire de Chine] ; Xiyang Wu [République populaire de Chine] ; Shuze Tang [République populaire de Chine] ; Xiaohui Sun [République populaire de Chine] ; Hoi-Shan Kwan [Hong Kong] ; Peter Chi-Keung Cheung [Hong Kong]Source :
- Journal of biotechnology [ 1873-4863 ] ; 2018.
Descripteurs français
- KwdFr :
- Analyse de séquence d'ADN (méthodes), Annotation de séquence moléculaire (MeSH), Biomasse (MeSH), Composition en bases nucléiques (MeSH), Diploïdie (MeSH), Génome fongique (MeSH), Lignine (métabolisme), Mycelium (croissance et développement), Mycelium (génétique), Pleurotus (croissance et développement), Pleurotus (génétique), Protéines fongiques (génétique), bêta-Glucanes (métabolisme).
- MESH :
- croissance et développement : Mycelium, Pleurotus.
- génétique : Mycelium, Pleurotus, Protéines fongiques.
- métabolisme : Lignine, bêta-Glucanes.
- méthodes : Analyse de séquence d'ADN.
- Annotation de séquence moléculaire, Biomasse, Composition en bases nucléiques, Diploïdie, Génome fongique.
English descriptors
- KwdEn :
- Base Composition (MeSH), Biomass (MeSH), Diploidy (MeSH), Fungal Proteins (genetics), Genome, Fungal (MeSH), Lignin (metabolism), Molecular Sequence Annotation (MeSH), Mycelium (genetics), Mycelium (growth & development), Pleurotus (genetics), Pleurotus (growth & development), Sequence Analysis, DNA (methods), beta-Glucans (metabolism).
- MESH :
- chemical , genetics : Fungal Proteins.
- chemical , metabolism : Lignin, beta-Glucans.
- genetics : Mycelium, Pleurotus.
- growth & development : Mycelium, Pleurotus.
- methods : Sequence Analysis, DNA.
- Base Composition, Biomass, Diploidy, Genome, Fungal, Molecular Sequence Annotation.
Abstract
Pleurotus tuber-regium (Fr.) Singer, being a white-rot fungus, is widely used for food and medicine in the Asia-Pacific region. In this study, we sequenced and annotated the genome of a dikaryon P. tuber-regium wild strain to provide a better understanding of the carbohydrate-active enzymes (CAZymes) involved in the bio-conversion of lignocellulose to beta-glucan reserves in this sclerotia-forming Pleurotus mushroom with reference to enzyme participated in cellulosic compound breakdown and glucan reserve biosynthesis. The present genomic data provides new insights for lignocellulose bioconversion of white-rot fungus for the genus Pleurotus.
DOI: 10.1016/j.jbiotec.2018.07.009
PubMed: 30003974
Affiliations:
- Hong Kong, République populaire de Chine
- Guangdong
- Jiangmen, Sha Tin, Shenzhen
- Université chinoise de Hong Kong
Links toward previous steps (curation, corpus...)
Le document en format XML
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Electronic address: petercheung@cuhk.edu.hk.</nlm:affiliation><country wicri:rule="url">Hong Kong</country></affiliation></author></analytic><series><title level="j">Journal of biotechnology</title><idno type="eISSN">1873-4863</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Base Composition (MeSH)</term><term>Biomass (MeSH)</term><term>Diploidy (MeSH)</term><term>Fungal Proteins (genetics)</term><term>Genome, Fungal (MeSH)</term><term>Lignin (metabolism)</term><term>Molecular Sequence Annotation (MeSH)</term><term>Mycelium (genetics)</term><term>Mycelium (growth & development)</term><term>Pleurotus (genetics)</term><term>Pleurotus (growth & development)</term><term>Sequence Analysis, DNA (methods)</term><term>beta-Glucans (metabolism)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence d'ADN (méthodes)</term><term>Annotation de séquence moléculaire (MeSH)</term><term>Biomasse (MeSH)</term><term>Composition en bases nucléiques (MeSH)</term><term>Diploïdie (MeSH)</term><term>Génome fongique (MeSH)</term><term>Lignine (métabolisme)</term><term>Mycelium (croissance et développement)</term><term>Mycelium (génétique)</term><term>Pleurotus (croissance et développement)</term><term>Pleurotus (génétique)</term><term>Protéines fongiques (génétique)</term><term>bêta-Glucanes (métabolisme)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Fungal Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Lignin</term><term>beta-Glucans</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Mycelium</term><term>Pleurotus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Mycelium</term><term>Pleurotus</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Mycelium</term><term>Pleurotus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Mycelium</term><term>Pleurotus</term><term>Protéines fongiques</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Lignine</term><term>bêta-Glucanes</term></keywords><keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Analyse de séquence d'ADN</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Composition</term><term>Biomass</term><term>Diploidy</term><term>Genome, Fungal</term><term>Molecular Sequence Annotation</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Annotation de séquence moléculaire</term><term>Biomasse</term><term>Composition en bases nucléiques</term><term>Diploïdie</term><term>Génome fongique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Pleurotus tuber-regium (Fr.) Singer, being a white-rot fungus, is widely used for food and medicine in the Asia-Pacific region. In this study, we sequenced and annotated the genome of a dikaryon P. tuber-regium wild strain to provide a better understanding of the carbohydrate-active enzymes (CAZymes) involved in the bio-conversion of lignocellulose to beta-glucan reserves in this sclerotia-forming Pleurotus mushroom with reference to enzyme participated in cellulosic compound breakdown and glucan reserve biosynthesis. The present genomic data provides new insights for lignocellulose bioconversion of white-rot fungus for the genus Pleurotus.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30003974</PMID><DateCompleted><Year>2018</Year><Month>12</Month><Day>11</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>11</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1873-4863</ISSN><JournalIssue CitedMedium="Internet"><Volume>283</Volume><PubDate><Year>2018</Year><Month>Oct</Month><Day>10</Day></PubDate></JournalIssue><Title>Journal of biotechnology</Title><ISOAbbreviation>J Biotechnol</ISOAbbreviation></Journal><ArticleTitle>The diploid genome of the only sclerotia-forming wild-type species in the genus Pleurotus -Pleurotus tuber-regium - provides insights into the mechanism of its biomass conversion from lignocellulose substrates.</ArticleTitle><Pagination><MedlinePgn>22-27</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S0168-1656(18)30535-2</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.jbiotec.2018.07.009</ELocationID><Abstract><AbstractText>Pleurotus tuber-regium (Fr.) Singer, being a white-rot fungus, is widely used for food and medicine in the Asia-Pacific region. In this study, we sequenced and annotated the genome of a dikaryon P. tuber-regium wild strain to provide a better understanding of the carbohydrate-active enzymes (CAZymes) involved in the bio-conversion of lignocellulose to beta-glucan reserves in this sclerotia-forming Pleurotus mushroom with reference to enzyme participated in cellulosic compound breakdown and glucan reserve biosynthesis. The present genomic data provides new insights for lignocellulose bioconversion of white-rot fungus for the genus Pleurotus.</AbstractText><CopyrightInformation>Copyright © 2018 Elsevier B.V. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Lam</LastName><ForeName>Ka-Lung</ForeName><Initials>KL</Initials><AffiliationInfo><Affiliation>Food and Nutritional Sciences Program, School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territory, Hong Kong Special Administrative Region.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Si</LastName><ForeName>Kaiwei</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Beijing Genomics Institute-Shenzhen, Shenzhen, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wu</LastName><ForeName>Xiyang</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Department of Food Science and Engineering, College of Science and Engineering, Jinan University, Guangzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tang</LastName><ForeName>Shuze</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Food Science and Engineering, College of Science and Engineering, Jinan University, Guangzhou, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sun</LastName><ForeName>Xiaohui</ForeName><Initials>X</Initials><AffiliationInfo><Affiliation>Beijing Genomics Institute-Shenzhen, Shenzhen, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kwan</LastName><ForeName>Hoi-Shan</ForeName><Initials>HS</Initials><AffiliationInfo><Affiliation>Food and Nutritional Sciences Program, School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territory, Hong Kong Special Administrative Region.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cheung</LastName><ForeName>Peter Chi-Keung</ForeName><Initials>PC</Initials><AffiliationInfo><Affiliation>Food and Nutritional Sciences Program, School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territory, Hong Kong Special Administrative Region. Electronic address: petercheung@cuhk.edu.hk.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>07</Month><Day>09</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>J Biotechnol</MedlineTA><NlmUniqueID>8411927</NlmUniqueID><ISSNLinking>0168-1656</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005656">Fungal Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D047071">beta-Glucans</NameOfSubstance></Chemical><Chemical><RegistryNumber>11132-73-3</RegistryNumber><NameOfSubstance UI="C036909">lignocellulose</NameOfSubstance></Chemical><Chemical><RegistryNumber>9005-53-2</RegistryNumber><NameOfSubstance UI="D008031">Lignin</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018533" MajorTopicYN="N">Biomass</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004171" MajorTopicYN="N">Diploidy</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005656" MajorTopicYN="N">Fungal Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016681" MajorTopicYN="N">Genome, Fungal</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008031" MajorTopicYN="N">Lignin</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D058977" MajorTopicYN="N">Molecular Sequence Annotation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D025282" MajorTopicYN="N">Mycelium</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020076" MajorTopicYN="N">Pleurotus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D047071" MajorTopicYN="N">beta-Glucans</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">BUSCO (Benchmarking Universal Single-Copy Orthologs)</Keyword><Keyword MajorTopicYN="N">Carbohydrate-active enzymes (CAZymes)</Keyword><Keyword MajorTopicYN="N">Diploid genome</Keyword><Keyword MajorTopicYN="N">Illumina sequencing</Keyword><Keyword MajorTopicYN="N">Pleurotus tuber-regium</Keyword><Keyword MajorTopicYN="N">Sclerotia-forming</Keyword><Keyword MajorTopicYN="N">White-rot fungi</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>10</Month><Day>21</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2018</Year><Month>06</Month><Day>04</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2018</Year><Month>07</Month><Day>03</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>7</Month><Day>14</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>12</Month><Day>12</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>7</Month><Day>14</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">30003974</ArticleId><ArticleId IdType="pii">S0168-1656(18)30535-2</ArticleId><ArticleId IdType="doi">10.1016/j.jbiotec.2018.07.009</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Hong Kong</li><li>République populaire de Chine</li></country><region><li>Guangdong</li></region><settlement><li>Jiangmen</li><li>Sha Tin</li><li>Shenzhen</li></settlement><orgName><li>Université chinoise de Hong Kong</li></orgName></list><tree><country name="Hong Kong"><noRegion><name sortKey="Lam, Ka Lung" sort="Lam, Ka Lung" uniqKey="Lam K" first="Ka-Lung" last="Lam">Ka-Lung Lam</name></noRegion><name sortKey="Cheung, Peter Chi Keung" sort="Cheung, Peter Chi Keung" uniqKey="Cheung P" first="Peter Chi-Keung" last="Cheung">Peter Chi-Keung Cheung</name><name sortKey="Kwan, Hoi Shan" sort="Kwan, Hoi Shan" uniqKey="Kwan H" first="Hoi-Shan" last="Kwan">Hoi-Shan Kwan</name></country><country name="République populaire de Chine"><region name="Guangdong"><name sortKey="Si, Kaiwei" sort="Si, Kaiwei" uniqKey="Si K" first="Kaiwei" last="Si">Kaiwei Si</name></region><name sortKey="Sun, Xiaohui" sort="Sun, Xiaohui" uniqKey="Sun X" first="Xiaohui" last="Sun">Xiaohui Sun</name><name sortKey="Tang, Shuze" sort="Tang, Shuze" uniqKey="Tang S" first="Shuze" last="Tang">Shuze Tang</name><name sortKey="Wu, Xiyang" sort="Wu, Xiyang" uniqKey="Wu X" first="Xiyang" last="Wu">Xiyang Wu</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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